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» Detecting Motifs from Sequences
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BMCBI
2010
167views more  BMCBI 2010»
14 years 10 months ago
Creating PWMs of transcription factors using 3D structure-based computation of protein-DNA free binding energies
Background: Knowledge of transcription factor-DNA binding patterns is crucial for understanding gene transcription. Numerous DNA-binding proteins are annotated as transcription fa...
Denitsa Alamanova, Philip Stegmaier, Alexander E. ...
ICPR
2006
IEEE
15 years 11 months ago
Online Learning of Discriminative Patterns from Unlimited Sequences of Candidates
Recent research in object recognition has demonstrated the advantages of representing objects and scenes through localized patterns such as small image templates. In this paper we...
Ilkka Autio, Jussi T. Lindgren
BMCBI
2010
138views more  BMCBI 2010»
14 years 10 months ago
Amino acid classification based spectrum kernel fusion for protein subnuclear localization
Background: Prediction of protein localization in subnuclear organelles is more challenging than general protein subcelluar localization. There are only three computational models...
Suyu Mei, Wang Fei
NAR
2000
84views more  NAR 2000»
14 years 9 months ago
SRPDB (Signal Recognition Particle Database)
The Signal Recognition Particle Database (SRPDB) at http://psyche.uthct.edu/dbs/SRPDB/SRPDB.html and http://bio.lundberg.gu.se/dbs/SRPDB/SRPDB. html assists in the better understa...
Christian Zwieb, Tore Samuelsson
BMCBI
2002
109views more  BMCBI 2002»
14 years 9 months ago
Kangaroo - A pattern-matching program for biological sequences
Background: Biologists are often interested in performing a simple database search to identify proteins or genes that contain a well-defined sequence pattern. Many databases do no...
Doron Betel, Christopher W. V. Hogue