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» Detecting microRNA activity from gene expression data
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BMCBI
2007
120views more  BMCBI 2007»
15 years 4 months ago
Recognition of interferon-inducible sites, promoters, and enhancers
Background: Computational analysis of gene regulatory regions is important for prediction of functions of many uncharacterized genes. With this in mind, search of the target genes...
Elena A. Ananko, Yury V. Kondrakhin, Tatyana I. Me...
135
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ICML
2007
IEEE
16 years 4 months ago
Recovering temporally rewiring networks: a model-based approach
A plausible representation of relational information among entities in dynamic systems such as a living cell or a social community is a stochastic network which is topologically r...
Fan Guo, Steve Hanneke, Wenjie Fu, Eric P. Xing
BMCBI
2010
108views more  BMCBI 2010»
14 years 11 months ago
Preferred analysis methods for Affymetrix GeneChips. II. An expanded, balanced, wholly-defined spike-in dataset
Background: Concomitant with the rise in the popularity of DNA microarrays has been a surge of proposed methods for the analysis of microarray data. Fully controlled "spike-i...
Qianqian Zhu, Jeffrey C. Miecznikowski, Marc S. Ha...
BMCBI
2008
163views more  BMCBI 2008»
15 years 4 months ago
The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology
Background: High-throughput genome biological experiments yield large and multifaceted datasets that require flexible and user-friendly analysis tools to facilitate their interpre...
Frédéric Chalmel, Michael Primig
BMCBI
2005
130views more  BMCBI 2005»
15 years 3 months ago
MiMiR: a comprehensive solution for storage, annotation and exchange of microarray data
Background: The generation of large amounts of microarray data presents challenges for data collection, annotation, exchange and analysis. Although there are now widely accepted f...
Mahendra Navarange, Laurence Game, Derek Fowler, V...