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BMCBI
2005
157views more  BMCBI 2005»
15 years 6 months ago
Decision Forest Analysis of 61 Single Nucleotide Polymorphisms in a Case-Control Study of Esophageal Cancer; a novel method
Background: Systematic evaluation and study of single nucleotide polymorphisms (SNPs) made possible by high throughput genotyping technologies and bioinformatics promises to provi...
Qian Xie, Luke D. Ratnasinghe, Huixiao Hong, Roger...
BMCBI
2004
112views more  BMCBI 2004»
15 years 6 months ago
A double classification tree search algorithm for index SNP selection
Background: In population-based studies, it is generally recognized that single nucleotide polymorphism (SNP) markers are not independent. Rather, they are carried by haplotypes, ...
Peisen Zhang, Huitao Sheng, Ryuhei Uehara
BMCBI
2002
108views more  BMCBI 2002»
15 years 6 months ago
A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure
Background: Covariance models (CMs) are probabilistic models of RNA secondary structure, analogous to profile hidden Markov models of linear sequence. The dynamic programming algo...
Sean R. Eddy
TCBB
2010
136views more  TCBB 2010»
15 years 4 months ago
Integrating Data Clustering and Visualization for the Analysis of 3D Gene Expression Data
— The recent development of methods for extracting precise measurements of spatial gene expression patterns from three-dimensional (3D) image data opens the way for new analyses ...
Oliver Rübel, Gunther H. Weber, Min-Yu Huang,...
ICDE
2007
IEEE
103views Database» more  ICDE 2007»
16 years 7 months ago
TCAM-conscious Algorithms for Data Streams
Recently, there has been significant interest in developing space and time efficient solutions for answering continuous summarization queries over data streams. While these techni...
Nagender Bandi, Ahmed Metwally, Divyakant Agrawal,...