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BMCBI
2008
111views more  BMCBI 2008»
14 years 9 months ago
A perl package and an alignment tool for phylogenetic networks
Background: Phylogenetic networks are a generalization of phylogenetic trees that allow for the representation of evolutionary events acting at the population level, like recombin...
Gabriel Cardona, Francesc Rosselló, Gabriel...
BMCBI
2005
292views more  BMCBI 2005»
14 years 9 months ago
Atlas - a data warehouse for integrative bioinformatics
Background: We present a biological data warehouse called Atlas that locally stores and integrates biological sequences, molecular interactions, homology information, functional a...
Sohrab P. Shah, Yong Huang, Tao Xu, Macaire M. S. ...
OOPSLA
2010
Springer
14 years 7 months ago
Composable specifications for structured shared-memory communication
In this paper we propose a communication-centric approach to specifying and checking how multithreaded programs use shared memory to perform inter-thread communication. Our approa...
Benjamin P. Wood, Adrian Sampson, Luis Ceze, Dan G...
BMCBI
2010
193views more  BMCBI 2010»
14 years 4 months ago
Mayday - integrative analytics for expression data
Background: DNA Microarrays have become the standard method for large scale analyses of gene expression and epigenomics. The increasing complexity and inherent noisiness of the ge...
Florian Battke, Stephan Symons, Kay Nieselt
WEA
2010
Springer
545views Algorithms» more  WEA 2010»
15 years 4 months ago
Experiments on Union-Find Algorithms for the Disjoint-Set Data Structure
Abstract. The disjoint-set data structure is used to maintain a collection of non-overlapping sets of elements from a finite universe. Algorithms that operate on this data structu...
Md. Mostofa Ali Patwary, Jean R. S. Blair, Fredrik...