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BMCBI
2005
108views more  BMCBI 2005»
15 years 5 months ago
SplitTester: software to identify domains responsible for functional divergence in protein family
Background: Many protein families have undergone functional divergence after gene duplications such that current subgroups of the family carry out overlapping but distinct biologi...
Xiang Gao, Kent Vander Velden, Daniel F. Voytas, X...
BMCBI
2004
323views more  BMCBI 2004»
15 years 5 months ago
Biochemical Network Stochastic Simulator (BioNetS): software for stochastic modeling of biochemical networks
Background: Intrinsic fluctuations due to the stochastic nature of biochemical reactions can have large effects on the response of biochemical networks. This is particularly true ...
David Adalsteinsson, David McMillen, Timothy C. El...
JCC
2011
133views more  JCC 2011»
15 years 1 days ago
MIBPB: A software package for electrostatic analysis
: The Poisson–Boltzmann equation (PBE) is an established model for the electrostatic analysis of biomolecules. The development of advanced computational techniques for the soluti...
Duan Chen, Zhan Chen, Changjun Chen, Weihua Geng, ...
SIGMOD
2011
ACM
249views Database» more  SIGMOD 2011»
14 years 8 months ago
FlexMin: a flexible tool for automatic bug isolation in DBMS software
Debugging a database engine is an arduous task due to the complexity of the query workloads and systems. The first step in isolating a bug involves identifying a sequence of step...
Kristi Morton, Nicolas Bruno
BMCBI
2007
239views more  BMCBI 2007»
15 years 5 months ago
Pre-processing Agilent microarray data
Background: Pre-processing methods for two-sample long oligonucleotide arrays, specifically the Agilent technology, have not been extensively studied. The goal of this study is to...
Marianna Zahurak, Giovanni Parmigiani, Wayne Yu, R...