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» Differential testing: a new approach to change detection
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BMCBI
2007
99views more  BMCBI 2007»
15 years 1 months ago
Identifying allosteric fluctuation transitions between different protein conformational states as applied to Cyclin Dependent Ki
Background: The mechanisms underlying protein function and associated conformational change are dominated by a series of local entropy fluctuations affecting the global structure ...
Jenny Gu, Philip E. Bourne
POPL
2012
ACM
13 years 9 months ago
Sound predictive race detection in polynomial time
Data races are among the most reliable indicators of programming errors in concurrent software. For at least two decades, Lamport’s happens-before (HB) relation has served as th...
Yannis Smaragdakis, Jacob Evans, Caitlin Sadowski,...
BMCBI
2011
14 years 5 months ago
SeqGene: a comprehensive software solution for mining exome- and transcriptome- sequencing data
Background: The popularity of massively parallel exome and transcriptome sequencing projects demands new data mining tools with a comprehensive set of features to support a wide r...
Xutao Deng
CONNECTION
2006
172views more  CONNECTION 2006»
15 years 1 months ago
Temporal sequence detection with spiking neurons: towards recognizing robot language instructions
We present an approach for recognition and clustering of spatio temporal patterns based on networks of spiking neurons with active dendrites and dynamic synapses. We introduce a n...
Christo Panchev, Stefan Wermter
BMCBI
2008
128views more  BMCBI 2008»
15 years 1 months ago
SIGffRid: A tool to search for sigma factor binding sites in bacterial genomes using comparative approach and biologically drive
Background: Many programs have been developed to identify transcription factor binding sites. However, most of them are not able to infer two-word motifs with variable spacer leng...
Fabrice Touzain, Sophie Schbath, Isabelle Debled-R...