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BMCBI
2008
160views more  BMCBI 2008»
14 years 12 months ago
Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package 'annotationTools'
Background: The variety of DNA microarray formats and datasets presently available offers an unprecedented opportunity to perform insightful comparisons of heterogeneous data. Cro...
Alexandre Kuhn, Ruth Luthi-Carter, Mauro Delorenzi
CORR
2010
Springer
177views Education» more  CORR 2010»
14 years 12 months ago
Supervised Random Walks: Predicting and Recommending Links in Social Networks
Predicting the occurrence of links is a fundamental problem in networks. In the link prediction problem we are given a snapshot of a network and would like to infer which interact...
Lars Backstrom, Jure Leskovec
BMCBI
2006
120views more  BMCBI 2006»
14 years 12 months ago
Optimizing amino acid substitution matrices with a local alignment kernel
Background: Detecting remote homologies by direct comparison of protein sequences remains a challenging task. We had previously developed a similarity score between sequences, cal...
Hiroto Saigo, Jean-Philippe Vert, Tatsuya Akutsu
BMCBI
2006
97views more  BMCBI 2006»
14 years 12 months ago
Goulphar: rapid access and expertise for standard two-color microarray normalization methods
Background: Raw data normalization is a critical step in microarray data analysis because it directly affects data interpretation. Most of the normalization methods currently used...
Sophie Lemoine, Florence Combes, Nicolas Servant, ...
ISI
2008
Springer
14 years 12 months ago
Probabilistic frameworks for privacy-aware data mining
Often several cooperating parties would like to have a global view of their joint data for various data mining objectives, but cannot reveal the contents of individual records due...
Joydeep Ghosh