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» Directionality in protein fold prediction
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BIBE
2000
IEEE
15 years 1 months ago
Mining Residue Contacts in Proteins
In this paper we develop data mining techniques to predict 3D contact potentials among protein residues (or amino acids) based on the hierarchical nucleationpropagation model of p...
Mohammed Javeed Zaki, Shan Jin, Chris Bystroff
69
Voted
CCE
2008
14 years 9 months ago
Prediction of secondary structures of proteins using a two-stage method
Protein structure determination and prediction has been a focal research subject in life sciences due to the importance of protein structure in understanding the biological and ch...
Fadime Üney Yüksektepe, Özlem Yilma...
BMCBI
2008
74views more  BMCBI 2008»
14 years 9 months ago
Prediction of mucin-type O-glycosylation sites in mammalian proteins using the composition of k-spaced amino acid pairs
Background: As one of the most common protein post-translational modifications, glycosylation is involved in a variety of important biological processes. Computational identificat...
Yong-Zi Chen, Yu-Rong Tang, Zhi-Ya Sheng, Ziding Z...
BMCBI
2010
107views more  BMCBI 2010»
14 years 4 months ago
Interaction prediction and classification of PDZ domains
Background: PDZ domain is a well-conserved, structural protein domain found in hundreds of signaling proteins that are otherwise unrelated. PDZ domains can bind to the C-terminal ...
Sibel Kalyoncu, Ozlem Keskin, Attila Gürsoy
BMCBI
2011
14 years 4 months ago
DoBo: Protein domain boundary prediction by integrating evolutionary signals and machine learning
Background: Accurate identification of protein domain boundaries is useful for protein structure determination and prediction. However, predicting protein domain boundaries from a...
Jesse Eickholt, Xin Deng, Jianlin Cheng