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BIOCOMP
2006
15 years 2 months ago
Acceleration of Covariance Models for Non-coding RNA Search
Stochastic context-free grammar (SCFG) based models for non-coding RNA (ncRNA) gene searches are much more powerful than regular grammar based models due to the ability to model in...
Scott F. Smith 0002
EMNLP
2010
14 years 11 months ago
Training Continuous Space Language Models: Some Practical Issues
Using multi-layer neural networks to estimate the probabilities of word sequences is a promising research area in statistical language modeling, with applications in speech recogn...
Hai Son Le, Alexandre Allauzen, Guillaume Wisniews...
BMCBI
2007
111views more  BMCBI 2007»
15 years 1 months ago
MotifCombinator: a web-based tool to search for combinations of cis-regulatory motifs
Background: A combination of multiple types of transcription factors and cis-regulatory elements is often required for gene expression in eukaryotes, and the combinatorial regulat...
Mamoru Kato, Tatsuhiko Tsunoda
BMCBI
2010
125views more  BMCBI 2010»
15 years 1 months ago
Large-scale prediction of protein-protein interactions from structures
Background: The prediction of protein-protein interactions is an important step toward the elucidation of protein functions and the understanding of the molecular mechanisms insid...
Martial Hue, Michael Riffle, Jean-Philippe Vert, W...
BMCBI
2007
149views more  BMCBI 2007»
15 years 1 months ago
A unified framework for finding differentially expressed genes from microarray experiments
Background: This paper presents a unified framework for finding differentially expressed genes (DEGs) from the microarray data. The proposed framework has three interrelated modul...
Jahangheer S. Shaik, Mohammed Yeasin