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» Discovering gene annotations in biomedical text databases
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SIGMOD
2004
ACM
88views Database» more  SIGMOD 2004»
15 years 9 months ago
Using Reasoning to Guide Annotation with Gene Ontology Terms in GOAT
High-quality annotation of biological data is central to bioinformatics. Annotation using terms from ontologies provides reliable computational access to data. The Gene Ontology (...
Michael Bada, Daniele Turi, Robin McEntire, Robert...
BMCBI
2008
137views more  BMCBI 2008»
14 years 9 months ago
Evading the annotation bottleneck: using sequence similarity to search non-sequence gene data
Background: Non-sequence gene data (images, literature, etc.) can be found in many different public databases. Access to these data is mostly by text based methods using gene name...
Michael J. Gilchrist, Mikkel B. Christensen, Richa...
BMCBI
2005
160views more  BMCBI 2005»
14 years 9 months ago
Data-poor categorization and passage retrieval for Gene Ontology Annotation in Swiss-Prot
Background: In the context of the BioCreative competition, where training data were very sparse, we investigated two complementary tasks: 1) given a Swiss-Prot triplet, containing...
Frédéric Ehrler, Antoine Geissbü...
IWANN
2009
Springer
15 years 4 months ago
Biomedical Text Mining Applied to Document Retrieval and Semantic Indexing
In Biomedical research, the ability to retrieve the adequate information from the ever growing literature is an extremely important asset. This work provides an enhanced and genera...
Anália Lourenço, Sónia Carnei...
CIKM
2009
Springer
15 years 2 months ago
Probabilistic models for topic learning from images and captions in online biomedical literatures
Biomedical images and captions are one of the major sources of information in online biomedical publications. They often contain the most important results to be reported, and pro...
Xin Chen, Caimei Lu, Yuan An, Palakorn Achananupar...