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    BIOCOMP
    2006
    233views Bioinformatics» more  BIOCOMP 2006»
    Dynamic Bayesian Network (DBN) with Structure Expectation Maximization (SEM) for Modeling of Gene Network from Time Series Gene
    14 years 10 months ago
    Dynamic Bayesian Network (DBN) with Structure Expectation Maximization (SEM) for Modeling of Gene Network from Time Series Gene
    Download  ww1.ucmss.com
    Exploring gene regulatory network is a key topic in molecular biology. In this paper, we present a new dynamic Bayesian network (DBN) framework embedded with structural expectatio...
    Yu Zhang, Zhidong Deng, Hongshan Jiang, Peifa Jia
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    KDD
    2005
    ACM
    91views Data Mining» more  KDD 2005»
    On mining cross-graph quasi-cliques
    15 years 9 months ago
    On mining cross-graph quasi-cliques
    Download  www.cs.sfu.ca
    Joint mining of multiple data sets can often discover interesting, novel, and reliable patterns which cannot be obtained solely from any single source. For example, in cross-marke...
    Jian Pei, Daxin Jiang, Aidong Zhang
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    BMCBI
    2007
    227views more  BMCBI 2007»
    Growing functional modules from a seed protein via integration of protein interaction and gene expression data
    14 years 9 months ago
    Growing functional modules from a seed protein via integration of protein interaction and gene expression data
    Download  www.biomedcentral.com
    Background: Nowadays modern biology aims at unravelling the strands of complex biological structures such as the protein-protein interaction (PPI) networks. A key concept in the o...
    Ioannis A. Maraziotis, Konstantina Dimitrakopoulou...
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    RECOMB
    2008
    Springer
    158views Computational Biology» more  RECOMB 2008»
    Detecting Disease-Specific Dysregulated Pathways Via Analysis of Clinical Expression Profiles
    15 years 9 months ago
    Detecting Disease-Specific Dysregulated Pathways Via Analysis of Clinical Expression Profiles
    Download  acgt.cs.tau.ac.il
    We present a method for identifying connected gene subnetworks significantly enriched for genes that are dysregulated in specimens of a disease. These subnetworks provide a signat...
    Igor Ulitsky, Richard M. Karp, Ron Shamir
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    BIOINFORMATICS
    2006
    135views more  BIOINFORMATICS 2006»
    Effective similarity measures for expression profiles
    14 years 9 months ago
    Effective similarity measures for expression profiles
    Download  biozon.org
    It is commonly accepted that genes with similar expression profiles are functionally related. However, there are many ways one can measure the similarity of expression profiles, a...
    Golan Yona, William Dirks, Shafquat Rahman, David ...
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