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BMCBI
2008
75views more  BMCBI 2008»
14 years 9 months ago
Re-searcher: a system for recurrent detection of homologous protein sequences
Background: Sequence searches are routinely employed to detect and annotate related proteins. However, a rapid growth of databases necessitates a frequent repetition of sequence s...
Valdemaras Repsys, Mindaugas Margelevicius, Ceslov...
FUIN
2008
136views more  FUIN 2008»
14 years 9 months ago
Multi-Dimensional Relational Sequence Mining
The issue addressed in this paper concerns the discovery of frequent multi-dimensional patterns from relational sequences. The great variety of applications of sequential pattern m...
Floriana Esposito, Nicola Di Mauro, Teresa Maria A...
BMCBI
2006
159views more  BMCBI 2006»
14 years 9 months ago
MultiSeq: unifying sequence and structure data for evolutionary analysis
Background: Since the publication of the first draft of the human genome in 2000, bioinformatic data have been accumulating at an overwhelming pace. Currently, more than 3 million...
Elijah Roberts, John Eargle, Dan Wright, Zaida Lut...
SP
2008
IEEE
138views Security Privacy» more  SP 2008»
14 years 9 months ago
A performance tuning methodology with compiler support
We have developed an environment, based upon robust, existing, open source software, for tuning applications written using MPI, OpenMP or both. The goal of this effort, which inte...
Oscar Hernandez, Barbara M. Chapman, Haoqiang Jin
BMCBI
2005
142views more  BMCBI 2005»
14 years 9 months ago
transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences
Background: Alignments of homologous DNA sequences are crucial for comparative genomics and phylogenetic analysis. However, multiple alignment represents a computationally difficu...
Olaf R. P. Bininda-Emonds