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BMCBI
2010
183views more  BMCBI 2010»
14 years 9 months ago
SOPRA: Scaffolding algorithm for paired reads via statistical optimization
Background: High throughput sequencing (HTS) platforms produce gigabases of short read (<100 bp) data per run. While these short reads are adequate for resequencing application...
Adel Dayarian, Todd P. Michael, Anirvan M. Sengupt...
BMCBI
2008
96views more  BMCBI 2008»
14 years 9 months ago
Novel methodology for construction and pruning of quasi-median networks
Background: Visualising the evolutionary history of a set of sequences is a challenge for molecular phylogenetics. One approach is to use undirected graphs, such as median network...
Sarah C. Ayling, Terence A. Brown
96
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CORR
2010
Springer
249views Education» more  CORR 2010»
14 years 9 months ago
Lower Bounds on Near Neighbor Search via Metric Expansion
In this paper we show how the complexity of performing nearest neighbor (NNS) search on a metric space is related to the expansion of the metric space. Given a metric space we loo...
Rina Panigrahy, Kunal Talwar, Udi Wieder
CORR
2008
Springer
138views Education» more  CORR 2008»
14 years 9 months ago
Computing Minimum Spanning Trees with Uncertainty
Abstract. We consider the minimum spanning tree problem in a setting where information about the edge weights of the given graph is uncertain. Initially, for each edge e of the gra...
Thomas Erlebach, Michael Hoffmann 0002, Danny Kriz...
77
Voted
DM
2007
97views more  DM 2007»
14 years 9 months ago
L(p, q) labeling of d-dimensional grids
In this paper, we address the problem of λ labelings, that was introduced in the context of frequency assignment for telecommunication networks. In this model, stations within a ...
Guillaume Fertin, André Raspaud