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BMCBI
2007
148views more  BMCBI 2007»
14 years 9 months ago
Blast sampling for structural and functional analyses
Background: The post-genomic era is characterised by a torrent of biological information flooding the public databases. As a direct consequence, similarity searches starting with ...
Anne Friedrich, Raymond Ripp, Nicolas Garnier, Emm...
IPPS
2009
IEEE
15 years 4 months ago
A cross-input adaptive framework for GPU program optimizations
Abstract—Recent years have seen a trend in using graphic processing units (GPU) as accelerators for general-purpose computing. The inexpensive, single-chip, massively parallel ar...
Yixun Liu, Eddy Z. Zhang, Xipeng Shen
73
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IEEEPACT
2008
IEEE
15 years 4 months ago
Mars: a MapReduce framework on graphics processors
We design and implement Mars, a MapReduce framework, on graphics processors (GPUs). MapReduce is a distributed programming framework originally proposed by Google for the ease of ...
Bingsheng He, Wenbin Fang, Qiong Luo, Naga K. Govi...
IPPS
2003
IEEE
15 years 3 months ago
Performing DNA Comparison on a Bio-Inspired Tissue of FPGAs
String comparison is a critical issue in many application domains, including speech recognition, contents search, and bioinformatics. The similarity between two strings of lengths...
Matteo Canella, Filippo Miglioli, Alessandro Bogli...
SAC
2009
ACM
15 years 4 months ago
Using geo-spatial session tagging for smart multicast session discovery
IP multicast is increasingly seen as efficient mode of live content distribution in the Internet to significantly large subscriber bases. Despite its numerous benefits over IP u...
Piyush Harsh, Richard Newman