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» Distributed Arrays: A P2P Data Structure for Efficient Logic...
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TSI
2008
89views more  TSI 2008»
13 years 6 months ago
RedGRID, un environnement pour la redistribution d'objets complexes
In the context of code coupling, efficient data redistribution is a crucial issue to reach high-performances. However, most of the works in this area have limited their studies to ...
Aurélien Esnard
BMCBI
2008
103views more  BMCBI 2008»
13 years 6 months ago
Parameter estimation for robust HMM analysis of ChIP-chip data
Background: Tiling arrays are an important tool for the study of transcriptional activity, proteinDNA interactions and chromatin structure on a genome-wide scale at high resolutio...
Peter Humburg, David Bulger, Glenn Stone
IPPS
2009
IEEE
14 years 27 days ago
Accelerating HMMer on FPGAs using systolic array based architecture
HMMer is a widely-used bioinformatics software package that uses profile HMMs (Hidden Markov Models) to model the primary structure consensus of a family of protein or nucleic aci...
Yanteng Sun, Peng Li, Guochang Gu, Yuan Wen, Yuan ...
IPPS
2002
IEEE
13 years 11 months ago
Implementing Associative Search and Responder Resolution
In a paper presented last year at WMPP’01 [Walker01], we described the initial prototype of an associative processor implemented using field-programmable logic devices (FPLDs). ...
Meiduo Wu, Robert A. Walker, Jerry L. Potter
SIGSOFT
2007
ACM
14 years 7 months ago
Finding bugs efficiently with a SAT solver
We present an approach for checking code against rich specifications, based on existing work that consists of encoding the program in a relational logic and using a constraint sol...
Julian Dolby, Mandana Vaziri, Frank Tip