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» Distributed Cell Biology Simulations with E-Cell System
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AINA
2008
IEEE
15 years 4 months ago
Service-Orientation and Flexible Service Binding in Distributed Automation and Control Systems
An experimental study shows the feasibility of service-oriented architectures for industrial automation and control systems even with respect to lower, real-time dependent control...
Andre Pohl, Heiko Krumm, Felix Holland, Franz-Jose...
BIOCOMP
2010
14 years 8 months ago
A Model Reduction Technique for Stochastic Biochemical Kinetics
Abstract-- Modeling the intermolecular reactions in a single cell is a critical problem in computational biology. Biochemical reaction systems often involve species in both low and...
Silvana Ilie, Ekaterina Kudashkina
RECOMB
2000
Springer
15 years 1 months ago
Using Bayesian networks to analyze expression data
DNA hybridization arrays simultaneously measure the expression level for thousands of genes. These measurements provide a "snapshot" of transcription levels within the c...
Nir Friedman, Michal Linial, Iftach Nachman, Dana ...
CAINE
2007
14 years 11 months ago
Parameter Estimation via Analysis of Fuzzy Clusters (PEAF): An Algorithm to Estimate Parameters of Agent-Based Models
Biologically focused, agent-based models need many parameters in order to simulate system dynamics. It is often essential to explore the consequences of many parameter vectors bef...
Shahab Sheikh-Bahaei, C. Anthony Hunt
HPCS
2007
IEEE
15 years 4 months ago
Utilizing Averaged Configuations from Molecular Dynamics Simulation Trajectories
One of the challenges in the large-scale simulations required for many molecular systems (such as those of biological interested) is the recording, monitoring and visualization of...
Peter G. Kusalik, K. Gillis, J. Vatamanu