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GECCO
2005
Springer
124views Optimization» more  GECCO 2005»
15 years 3 months ago
Evolving petri nets to represent metabolic pathways
Given concentrations of metabolites over a sequence of time steps, the metabolic pathway prediction problem seeks a set of reactions and rate constants for them that could yield t...
Jeremiah Nummela, Bryant A. Julstrom
BMCBI
2007
95views more  BMCBI 2007»
14 years 9 months ago
ZPS: visualization of recent adaptive evolution of proteins
Background: Detection of adaptive amino acid changes in proteins under recent short-term selection is of great interest for researchers studying microevolutionary processes in mic...
Sujay Chattopadhyay, Daniel E. Dykhuizen, Evgeni V...
KDD
2010
ACM
272views Data Mining» more  KDD 2010»
14 years 7 months ago
Scalable similarity search with optimized kernel hashing
Scalable similarity search is the core of many large scale learning or data mining applications. Recently, many research results demonstrate that one promising approach is creatin...
Junfeng He, Wei Liu, Shih-Fu Chang
BMCBI
2010
108views more  BMCBI 2010»
14 years 6 months ago
BIGSdb: Scalable analysis of bacterial genome variation at the population level
Background: The opportunities for bacterial population genomics that are being realised by the application of parallel nucleotide sequencing require novel bioinformatics platforms...
Keith A. Jolley, Martin C. J. Maiden
DAC
2003
ACM
15 years 2 months ago
Instruction set compiled simulation: a technique for fast and flexible instruction set simulation
Instruction set simulators are critical tools for the exploration and validation of new programmable architectures. Due to increasing complexity of the architectures and timeto-ma...
Mehrdad Reshadi, Prabhat Mishra, Nikil D. Dutt