Bioinformatics researchers need efficient means to process large collections of sequence data. One application of interest, genome assembly, has great potential for parallelizati...
Christopher Moretti, Michael Olson, Scott J. Emric...
In earlier work, we showed that the one-sided communication model found in PGAS languages (such as UPC) offers significant advantages in communication efficiency by decoupling d...
Rajesh Nishtala, Paul Hargrove, Dan Bonachea, Kath...
The increasing demand for computational cycles is being met by the use of multi-core processors. Having large number of cores per node necessitates multi-core aware designs to ext...
Krishna Chaitanya Kandalla, Hari Subramoni, Gopala...
—Using the well-known ATLAS and LAPACK dense linear algebra libraries, we demonstrate that the parallel management overhead (PMO) can grow with problem size on even statically sc...
Large and fast hard disks for little money have enabled the processing of huge amounts of data on a single machine. For this purpose, the well-established STXXL library provides a...
Andreas Beckmann, Roman Dementiev, Johannes Single...