This paper presents a parallel version of CLUSTAL W, called pCLUSTAL. In contrast to the commercial SGI parallel Clustal, which requires an expensive shared memory SGI multiprocess...
James Cheetham, Frank K. H. A. Dehne, Sylvain Pitr...
We developed a multithreaded parallel implementation of a sequence alignment algorithm that is able to align whole genomes with reliable output and reasonable cost. This paper pres...
Juan del Cuvillo, Xinmin Tian, Guang R. Gao, Milin...
This paper introduces TUTW – Temporal Uncertainty Time Warp – a control engine designed for an exploitation of temporal uncertainty (TU) in general optimistic simulations, and...
In this paper, we describe an algorithm and implementation of locality optimizations for architectures with instruction sets such as Intel’s SSE and Motorola’s AltiVec that su...
Tiling has long been used to improve cache performance. Recursion has recently been used as a cache-oblivious method of improving cache performance. Both of these techniques are n...
Joon-Sang Park, Michael Penner, Viktor K. Prasanna