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ICCSA
2003
Springer
15 years 9 months ago
Parallel CLUSTAL W for PC Clusters
This paper presents a parallel version of CLUSTAL W, called pCLUSTAL. In contrast to the commercial SGI parallel Clustal, which requires an expensive shared memory SGI multiprocess...
James Cheetham, Frank K. H. A. Dehne, Sylvain Pitr...
ISHPC
2003
Springer
15 years 9 months ago
Performance Study of a Whole Genome Comparison Tool on a Hyper-Threading Multiprocessor
We developed a multithreaded parallel implementation of a sequence alignment algorithm that is able to align whole genomes with reliable output and reasonable cost. This paper pres...
Juan del Cuvillo, Xinmin Tian, Guang R. Gao, Milin...
ANSS
2002
IEEE
15 years 9 months ago
Temporal Uncertainty Time Warp: An Agent-Based Implementation
This paper introduces TUTW – Temporal Uncertainty Time Warp – a control engine designed for an exploitation of temporal uncertainty (TU) in general optimistic simulations, and...
Roberto Beraldi, Libero Nigro, Antonino Orlando, F...
IEEEPACT
2002
IEEE
15 years 9 months ago
Compiler-Controlled Caching in Superword Register Files for Multimedia Extension Architectures
In this paper, we describe an algorithm and implementation of locality optimizations for architectures with instruction sets such as Intel’s SSE and Motorola’s AltiVec that su...
Jaewook Shin, Jacqueline Chame, Mary W. Hall
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IPPS
2002
IEEE
15 years 9 months ago
Optimizing Graph Algorithms for Improved Cache Performance
Tiling has long been used to improve cache performance. Recursion has recently been used as a cache-oblivious method of improving cache performance. Both of these techniques are n...
Joon-Sang Park, Michael Penner, Viktor K. Prasanna