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ATAL
2003
Springer
16 years 19 days ago
A multi-agent system for the quantitative simulation of biological networks
We apply the multi-agent system (MAS) platform to the task of biological network simulation. In this paper, we describe the simulation of signal transduction (ST) networks using t...
Salim Khan, Ravi Makkena, Foster McGeary, Keith S....
ISAAC
2003
Springer
85views Algorithms» more  ISAAC 2003»
16 years 18 days ago
Geometric Restrictions on Producible Polygonal Protein Chains
Fixed-angle polygonal chains in 3D serve as an interesting model of protein backbones. Here we consider such chains produced inside a “machine” modeled crudely as a cone, and e...
Erik D. Demaine, Stefan Langerman, Joseph O'Rourke
IPPS
2002
IEEE
16 years 10 days ago
Implementing Associative Search and Responder Resolution
In a paper presented last year at WMPP’01 [Walker01], we described the initial prototype of an associative processor implemented using field-programmable logic devices (FPLDs). ...
Meiduo Wu, Robert A. Walker, Jerry L. Potter
217
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SPAA
2010
ACM
16 years 6 days ago
Implementing and evaluating nested parallel transactions in software transactional memory
Transactional Memory (TM) is a promising technique that simplifies parallel programming for shared-memory applications. To date, most TM systems have been designed to efficientl...
Woongki Baek, Nathan Grasso Bronson, Christos Kozy...
212
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SPAA
2010
ACM
16 years 6 days ago
TLRW: return of the read-write lock
TL2 and similar STM algorithms deliver high scalability based on write-locking and invisible readers. In fact, no modern STM design locks to read along its common execution path b...
David Dice, Nir Shavit
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