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ICPP
2003
IEEE
15 years 10 months ago
FastLSA: A Fast, Linear-Space, Parallel and Sequential Algorithm for Sequence Alignment
Pairwise sequence alignment is a fundamental operation for homology search in bioinformatics. For two DNA or protein sequences of length ¢ and £ , full-matrix (FM), dynamic prog...
Adrian Driga, Paul Lu, Jonathan Schaeffer, Duane S...
IPPS
2003
IEEE
15 years 10 months ago
ECO: An Empirical-Based Compilation and Optimization System
In this paper, we describe a compilation system that automates much of the process of performance tuning that is currently done manually by application programmers interested in h...
Nastaran Baradaran, Jacqueline Chame, Chun Chen, P...
JCDL
2003
ACM
80views Education» more  JCDL 2003»
15 years 10 months ago
Repository Synchronization in the OAI Framework
The Open Archives Initiative Protocol for Metadata Harvesting (OAI-PMH) began as an alternative to distributed searching of scholarly eprint repositories. The model embraced by th...
Xiaoming Liu 0005, Kurt Maly, Mohammad Zubair, Mic...
IPTPS
2003
Springer
15 years 10 months ago
Sloppy Hashing and Self-Organizing Clusters
We are building Coral, a peer-to-peer content distribution system. Coral creates self-organizing clusters of nodes that fetch information from each other to avoid communicating wi...
Michael J. Freedman, David Mazières
ISHPC
2003
Springer
15 years 10 months ago
Performance Study of a Whole Genome Comparison Tool on a Hyper-Threading Multiprocessor
We developed a multithreaded parallel implementation of a sequence alignment algorithm that is able to align whole genomes with reliable output and reasonable cost. This paper pres...
Juan del Cuvillo, Xinmin Tian, Guang R. Gao, Milin...