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BMCBI
2005
107views more  BMCBI 2005»
15 years 7 days ago
Identifying differential expression in multiple SAGE libraries: an overdispersed log-linear model approach
Background: In testing for differential gene expression involving multiple serial analysis of gene expression (SAGE) libraries, it is critical to account for both between and with...
Jun Lu, John K. Tomfohr, Thomas B. Kepler
JCC
2007
79views more  JCC 2007»
15 years 7 days ago
Interfacing Q-Chem and CHARMM to perform QM/MM reaction path calculations
Abstract: A hybrid quantum mechanical/molecular mechanical (QM/MM) potential energy function with HartreeFock, density functional theory (DFT), and post-HF (RIMP2, MP2, CCSD) capab...
H. Lee Woodcock III, Milan Hodoscek, Andrew T. B. ...
TWC
2008
141views more  TWC 2008»
15 years 6 days ago
Progressive Accumulative Routing: Fundamental Concepts and Protocol
This paper considers a multi-hop network in which relay nodes cooperate to minimize the total energy consumed in transmitting a (unicast) packet from a source to a destination. We...
Raymond Yim, Neelesh B. Mehta, Andreas F. Molisch,...
131
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BMCBI
2004
180views more  BMCBI 2004»
15 years 6 days ago
Noise filtering and nonparametric analysis of microarray data underscores discriminating markers of oral, prostate, lung, ovaria
Background: A major goal of cancer research is to identify discrete biomarkers that specifically characterize a given malignancy. These markers are useful in diagnosis, may identi...
Virginie M. Aris, Michael J. Cody, Jeff Cheng, Jam...
116
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BMCBI
2004
95views more  BMCBI 2004»
15 years 6 days ago
PCOGR: Phylogenetic COG ranking as an online tool to judge the specificity of COGs with respect to freely definable groups of or
Background: The rapidly increasing number of completely sequenced genomes led to the establishment of the COG-database which, based on sequence homologies, assigns similar protein...
Florian Meereis, Michael Kaufmann