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WABI
2004
Springer
107views Bioinformatics» more  WABI 2004»
15 years 2 months ago
Phylogenetic Super-networks from Partial Trees
—In practice, one is often faced with incomplete phylogenetic data, such as a collection of partial trees or partial splits. This paper poses the problem of inferring a phylogene...
Daniel H. Huson, Tobias Dezulian, Tobias H. Kl&oum...
NAR
2008
119views more  NAR 2008»
14 years 9 months ago
TreeFam: 2008 Update
TreeFam (http://www.treefam.org) was developed to provide curated phylogenetic trees for all animal gene families, as well as orthologue and paralogue assignments. Release 4.0 of ...
Jue Ruan, Heng Li, Zhongzhong Chen, Avril Coghlan,...
CSB
2005
IEEE
130views Bioinformatics» more  CSB 2005»
15 years 3 months ago
TreeRefiner: A Tool for Refining a Multiple Alignment on a Phylogenetic Tree
We present TreeRefiner, a tool for refining multiple alignments of biological sequences. Given a multiple alignment, a phylogenetic tree, and scoring parameters as input, TreeRefi...
Aswath Manohar, Serafim Batzoglou
NAR
2006
91views more  NAR 2006»
14 years 9 months ago
TreeFam: a curated database of phylogenetic trees of animal gene families
TreeFam is a database of phylogenetic trees of gene families found in animals. It aims to develop a curated resource that presents the accurate evolutionary his20 tory of all anim...
Heng Li, Avril Coghlan, Jue Ruan, Lachlan James M....
CCCG
1998
14 years 10 months ago
Proximity drawings of binary trees in polynomial area
In this paper, we study weak {proximity drawings. All known algorithms that compute (weak) proximity drawings produce representations whose area increases exponentiallywith the nu...
Paolo Penna, Paola Vocca