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» Drawing Phylogenetic Trees
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BIBE
2006
IEEE
135views Bioinformatics» more  BIBE 2006»
15 years 3 months ago
Evidence of Multiple Maximum Likelihood Points for a Phylogenetic Tree
An interesting and important, but largely ignored question associated with the ML method is whether there exists only a single maximum likelihood point for a given phylogenetic tr...
Bing Bing Zhou, Monther Tarawneh, Pinghao Wang, Da...
BIBM
2008
IEEE
134views Bioinformatics» more  BIBM 2008»
15 years 4 months ago
New Approaches to Compare Phylogenetic Search Heuristics
We present new and novel insights into the behavior of two maximum parsimony heuristics for building evolutionary trees of different sizes. First, our results show that the heuris...
Seung-Jin Sul, Suzanne Matthews, Tiffani L. Willia...
JCB
2007
92views more  JCB 2007»
14 years 9 months ago
Neighbor Joining Algorithms for Inferring Phylogenies via LCA Distances
Reconstructing phylogenetic trees efficiently and accurately from distance estimates is an ongoing challenge in computational biology from both practical and theoretical consider...
Ilan Gronau, Shlomo Moran
ISMB
2003
14 years 11 months ago
Deriving phylogenetic trees from the similarity analysis of metabolic pathways
Comparative analysis of metabolic pathways in different genomes can give insights into the understanding of evolutionary and organizational relationships among species. This type ...
Maureen Heymans, Ambuj K. Singh
IPL
2002
90views more  IPL 2002»
14 years 9 months ago
On the approximability of two tree drawing conventions
We consider two aesthetic criteria for the visualization of rooted trees: inclusion and tip-over. Finding the minimum area layout according to either of these two standards is an ...
Paolo Penna