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» Drawing Phylogenetic Trees
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STOC
2006
ACM
129views Algorithms» more  STOC 2006»
16 years 2 days ago
Optimal phylogenetic reconstruction
One of the major tasks of evolutionary biology is the reconstruction of phylogenetic trees from molecular data. The evolutionary model is given by a Markov chain on the true evolu...
Constantinos Daskalakis, Elchanan Mossel, Sé...
BMCBI
2006
112views more  BMCBI 2006»
14 years 11 months ago
Phylophenetic properties of metabolic pathway topologies as revealed by global analysis
Background: As phenotypic features derived from heritable characters, the topologies of metabolic pathways contain both phylogenetic and phenetic components. In the post-genomic e...
Yong Zhang, Shaojuan Li, Geir Skogerbø, Zhi...
APVIS
2004
15 years 1 months ago
Optimal Leaf Ordering for Two and a Half Dimensional Phylogenetic Tree Visualisation
Two and a half dimensional graph visualisation is the stacking of a set of related graphs into the third dimension to support visual comparison. A new aesthetic criterion is intro...
Tim Dwyer, Falk Schreiber
BMCBI
2006
127views more  BMCBI 2006»
14 years 11 months ago
Construction of phylogenetic trees by kernel-based comparative analysis of metabolic networks
Background: To infer the tree of life requires knowledge of the common characteristics of each species descended from a common ancestor as the measuring criteria and a method to c...
Sok June Oh, Je-Gun Joung, Jeong Ho Chang, Byoung-...
ISMDA
2005
Springer
15 years 5 months ago
Using Treemaps to Visualize Phylogenetic Trees
Over recent years the field of phylogenetics has witnessed significant algorithmic and technical progress. A new class of efficient phylogeny programs allows for computation of l...
Adam Arvelakis, Martin Reczko, Alexandros Stamatak...