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» Drawing Phylogenetic Trees
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ACSC
2007
IEEE
15 years 6 months ago
Compact Layout of Layered Trees
The standard layered drawing convention for trees in which the vertical placement of a node is given by its level in the tree and each node is centered between its children can le...
Kim Marriott, Peter Sbarski
BMEI
2008
IEEE
15 years 6 months ago
A New Approach for Tree Alignment Based on Local Re-Optimization
Multiple sequence alignment is the most fundamental task in bioinformatics and computational biology. In this paper, we present a new algorithm to conduct multiple sequences align...
Feng Yue, Jijun Tang
BMCBI
2008
86views more  BMCBI 2008»
14 years 12 months ago
Is plant mitochondrial RNA editing a source of phylogenetic incongruence? An answer from in silico and in vivo data sets
Background: In plant mitochondria, the post-transcriptional RNA editing process converts C to U at a number of specific sites of the mRNA sequence and usually restores phylogeneti...
Ernesto Picardi, Carla Quagliariello
COMGEO
2004
ACM
14 years 11 months ago
Proximity drawings in polynomial area and volume
We introduce a novel technique for drawing proximity graphs in polynomial area and volume. Previously known algorithms produce representations whose size increases exponentially w...
Paolo Penna, Paola Vocca
GD
2004
Springer
15 years 5 months ago
Really Straight Graph Drawings
We study straight-line drawings of graphs with few segments and few slopes. Optimal results are obtained for all trees. Tight bounds are obtained for outerplanar graphs, 2-trees, a...
Vida Dujmovic, Matthew Suderman, David R. Wood