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» Drawing Phylogenetic Trees
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IPPS
2006
IEEE
15 years 5 months ago
Phylogenetic models of rate heterogeneity: a high performance computing perspective
Inference of phylogenetic trees using the maximum likelihood (ML) method is NP-hard. Furthermore, the computation of the likelihood function for huge trees of more than 1,000 orga...
Alexandros Stamatakis
IPPS
2006
IEEE
15 years 5 months ago
Parallel implementation of a quartet-based algorithm for phylogenetic analysis
This paper describes a parallel implementation of our recently developed algorithm for phylogenetic analysis on the IBM BlueGene/L cluster [15]. This algorithm constructs evolutio...
Bing Bing Zhou, Daniel Chu, Monther Tarawneh, Ping...
BIBE
2003
IEEE
15 years 5 months ago
An Investigation of Phylogenetic Likelihood Methods
Abstract— We analyze the performance of likelihoodbased approaches used to reconstruct phylogenetic trees. Unlike other techniques such as Neighbor-Joining (NJ) and Maximum Parsi...
Tiffani L. Williams, Bernard M. E. Moret
GD
1998
Springer
15 years 4 months ago
Balanced Aspect Ratio Trees and Their Use for Drawing Very Large Graphs
We describe a new approach for cluster-based drawing of very large graphs, which obtains clusters by using binary space partition (BSP) trees. We also introduce a novel BSP-type de...
Christian A. Duncan, Michael T. Goodrich, Stephen ...
CORR
2010
Springer
155views Education» more  CORR 2010»
14 years 12 months ago
Drawing Trees with Perfect Angular Resolution and Polynomial Area
We study methods for drawing trees with perfect angular resolution, i.e., with angles at each vertex, v, equal to 2/d(v). We show:
Christian A. Duncan, David Eppstein, Michael T. Go...