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» Drawing Phylogenetic Trees
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IPPS
2006
IEEE
15 years 8 months ago
Phylogenetic models of rate heterogeneity: a high performance computing perspective
Inference of phylogenetic trees using the maximum likelihood (ML) method is NP-hard. Furthermore, the computation of the likelihood function for huge trees of more than 1,000 orga...
Alexandros Stamatakis
IPPS
2006
IEEE
15 years 8 months ago
Parallel implementation of a quartet-based algorithm for phylogenetic analysis
This paper describes a parallel implementation of our recently developed algorithm for phylogenetic analysis on the IBM BlueGene/L cluster [15]. This algorithm constructs evolutio...
Bing Bing Zhou, Daniel Chu, Monther Tarawneh, Ping...
102
Voted
BIBE
2003
IEEE
15 years 7 months ago
An Investigation of Phylogenetic Likelihood Methods
Abstract— We analyze the performance of likelihoodbased approaches used to reconstruct phylogenetic trees. Unlike other techniques such as Neighbor-Joining (NJ) and Maximum Parsi...
Tiffani L. Williams, Bernard M. E. Moret
GD
1998
Springer
15 years 6 months ago
Balanced Aspect Ratio Trees and Their Use for Drawing Very Large Graphs
We describe a new approach for cluster-based drawing of very large graphs, which obtains clusters by using binary space partition (BSP) trees. We also introduce a novel BSP-type de...
Christian A. Duncan, Michael T. Goodrich, Stephen ...
CORR
2010
Springer
155views Education» more  CORR 2010»
15 years 2 months ago
Drawing Trees with Perfect Angular Resolution and Polynomial Area
We study methods for drawing trees with perfect angular resolution, i.e., with angles at each vertex, v, equal to 2/d(v). We show:
Christian A. Duncan, David Eppstein, Michael T. Go...