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» Drawing Phylogenetic Trees
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SSDBM
2002
IEEE
122views Database» more  SSDBM 2002»
15 years 4 months ago
ATreeGrep: Approximate Searching in Unordered Trees
An unordered labeled tree is a tree in which each node has a string label and the parent-child relationship is significant, but the order among siblings is unimportant. This pape...
Dennis Shasha, Jason Tsong-Li Wang, Huiyuan Shan, ...
ISBRA
2010
Springer
15 years 6 months ago
Uncovering Hidden Phylogenetic Consensus
Abstract. Many of the steps in phylogenetic reconstruction can be confounded by “rogue” taxa, taxa that cannot be placed with assurance anywhere within the tree—whose locatio...
Nicholas D. Pattengale, Krister M. Swenson, Bernar...
BMCBI
2005
97views more  BMCBI 2005»
14 years 11 months ago
Phylogenetic reconstruction of ancestral character states for gene expression and mRNA splicing data
Background: As genomes evolve after speciation, gene content, coding sequence, gene expression, and splicing all diverge with time from ancestors with close relatives. A minimum e...
Roald Rossnes, Ingvar Eidhammer, David A. Liberles
RECOMB
2009
Springer
15 years 6 months ago
Phylogenies without Branch Bounds: Contracting the Short, Pruning the Deep
Abstract Constantinos Daskalakis1 , Elchanan Mossel2, , and Sebastien Roch1 1 Microsoft Research 2 UC Berkeley and Weizman Institute We introduce a new phylogenetic reconstruction ...
Constantinos Daskalakis, Elchanan Mossel, Sé...
CSB
2003
IEEE
110views Bioinformatics» more  CSB 2003»
15 years 5 months ago
Prokaryote Phylogeny without Sequence Alignment: From Avoidance Signature to Composition Distance
A new and essentially simple method to reconstruct prokaryotic phylogenetic trees from their complete genome data without using sequence alignment is proposed. It is based on the ...
Bailin Hao, Ji Qi