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BMCBI
2010
110views more  BMCBI 2010»
14 years 12 months ago
Discovering local patterns of co - evolution: computational aspects and biological examples
Background: Co-evolution is the process in which two (or more) sets of orthologs exhibit a similar or correlative pattern of evolution. Co-evolution is a powerful way to learn abo...
Tamir Tuller, Yifat Felder, Martin Kupiec
BMCBI
2007
153views more  BMCBI 2007»
14 years 12 months ago
An exploration of alternative visualisations of the basic helix-loop-helix protein interaction network
Background: Alternative representations of biochemical networks emphasise different aspects of the data and contribute to the understanding of complex biological systems. In this ...
Brian J. Holden, John W. Pinney, Simon C. Lovell, ...
GECCO
2004
Springer
211views Optimization» more  GECCO 2004»
15 years 5 months ago
Node-Depth Encoding for Evolutionary Algorithms Applied to Network Design
Network design involves several areas of engineering and science. Computer networks, electrical circuits, transportation problems, and phylogenetic trees are some examples. In gene...
Alexandre C. B. Delbem, André Carlos Ponce ...
BMCBI
2010
104views more  BMCBI 2010»
14 years 6 months ago
A systematic study of genome context methods: calibration, normalization and combination
Background: Genome context methods have been introduced in the last decade as automatic methods to predict functional relatedness between genes in a target genome using the patter...
Luciana Ferrer, Joseph M. Dale, Peter D. Karp
DIAGRAMS
2004
Springer
15 years 5 months ago
Drawing Graphs in Euler Diagrams
We describe a method for drawing graph-enhanced Euler diagrams using a three stage method. The first stage is to lay out the underlying Euler diagram using a multicriteria optimizi...
Paul Mutton, Peter Rodgers, Jean Flower