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AB
2008
Springer
15 years 4 months ago
The Geometry of the Neighbor-Joining Algorithm for Small Trees
In 2007, Eickmeyer et al. showed that the tree topologies outputted by the Neighbor-Joining (NJ) algorithm and the balanced minimum evolution (BME) method for phylogenetic reconstr...
Kord Eickmeyer, Ruriko Yoshida
SODA
2008
ACM
96views Algorithms» more  SODA 2008»
15 years 3 months ago
Greedy drawings of triangulations
Greedy Routing is a class of routing algorithms in which the packets are forwarded in a manner that reduces the distance to the destination at every step. In an attempt to provide...
Raghavan Dhandapani
TCBB
2008
107views more  TCBB 2008»
15 years 1 months ago
Progressive Tree Neighborhood Applied to the Maximum Parsimony Problem
Abstract-- The Maximum Parsimony problem aims at reconstructing a phylogenetic tree from DNA sequences while minimizing the number of genetic transformations. To solve this NP-comp...
Adrien Goëffon, Jean-Michel Richer, Jin-Kao H...
GD
2008
Springer
15 years 3 months ago
Rapid Multipole Graph Drawing on the GPU
Abstract. As graphics processors become powerful, ubiquitous and easier to program, they have also become more amenable to general purpose high-performance computing, including the...
Apeksha Godiyal, Jared Hoberock, Michael Garland, ...
UAI
2008
15 years 3 months ago
Bayesian Out-Trees
A Bayesian treatment of latent directed graph structure for non-iid data is provided where each child datum is sampled with a directed conditional dependence on a single unknown p...
Tony Jebara