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AB
2008
Springer
15 years 1 months ago
The Geometry of the Neighbor-Joining Algorithm for Small Trees
In 2007, Eickmeyer et al. showed that the tree topologies outputted by the Neighbor-Joining (NJ) algorithm and the balanced minimum evolution (BME) method for phylogenetic reconstr...
Kord Eickmeyer, Ruriko Yoshida
SODA
2008
ACM
96views Algorithms» more  SODA 2008»
15 years 1 months ago
Greedy drawings of triangulations
Greedy Routing is a class of routing algorithms in which the packets are forwarded in a manner that reduces the distance to the destination at every step. In an attempt to provide...
Raghavan Dhandapani
TCBB
2008
107views more  TCBB 2008»
14 years 11 months ago
Progressive Tree Neighborhood Applied to the Maximum Parsimony Problem
Abstract-- The Maximum Parsimony problem aims at reconstructing a phylogenetic tree from DNA sequences while minimizing the number of genetic transformations. To solve this NP-comp...
Adrien Goëffon, Jean-Michel Richer, Jin-Kao H...
GD
2008
Springer
15 years 28 days ago
Rapid Multipole Graph Drawing on the GPU
Abstract. As graphics processors become powerful, ubiquitous and easier to program, they have also become more amenable to general purpose high-performance computing, including the...
Apeksha Godiyal, Jared Hoberock, Michael Garland, ...
UAI
2008
15 years 1 months ago
Bayesian Out-Trees
A Bayesian treatment of latent directed graph structure for non-iid data is provided where each child datum is sampled with a directed conditional dependence on a single unknown p...
Tony Jebara