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» Drawing Phylogenetic Trees
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BMCBI
2006
92views more  BMCBI 2006»
14 years 12 months ago
Recrafting the neighbor-joining method
Background: The neighbor-joining method by Saitou and Nei is a widely used method for constructing phylogenetic trees. The formulation of the method gives rise to a canonical (n3)...
Thomas Mailund, Gerth Stølting Brodal, Rolf...
BMCBI
2005
134views more  BMCBI 2005»
14 years 11 months ago
Ancestral sequence alignment under optimal conditions
Background: Multiple genome alignment is an important problem in bioinformatics. An important subproblem used by many multiple alignment approaches is that of aligning two multipl...
Alexander K. Hudek, Daniel G. Brown 0001
BMCBI
2010
135views more  BMCBI 2010»
14 years 12 months ago
GIGA: a simple, efficient algorithm for gene tree inference in the genomic age
Background: Phylogenetic relationships between genes are not only of theoretical interest: they enable us to learn about human genes through the experimental work on their relativ...
Paul D. Thomas
SFP
2001
15 years 1 months ago
The Dual of Substitution is Redecoration
: It is well known that type constructors of incomplete trees (trees with variables) carry the structure of a monad with substitution as the extension operation. Less known are the...
Tarmo Uustalu, Varmo Vene
ORDER
2006
97views more  ORDER 2006»
14 years 11 months ago
Upward Three-Dimensional Grid Drawings of Graphs
A three-dimensional grid drawing of a graph is a placement of the vertices at distinct points with integer coordinates, such that the straight line segments representing the edges ...
Vida Dujmovic, David R. Wood