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» Drawing Phylogenetic Trees
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110
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BMCBI
2007
165views more  BMCBI 2007»
15 years 2 months ago
Direct maximum parsimony phylogeny reconstruction from genotype data
Background: Maximum parsimony phylogenetic tree reconstruction from genetic variation data is a fundamental problem in computational genetics with many practical applications in p...
Srinath Sridhar, Fumei Lam, Guy E. Blelloch, R. Ra...
BMCBI
2010
137views more  BMCBI 2010»
14 years 9 months ago
The ancient history of the structure of ribonuclease P and the early origins of Archaea
Background: Ribonuclease P is an ancient endonuclease that cleaves precursor tRNA and generally consists of a catalytic RNA subunit (RPR) and one or more proteins (RPPs). It repre...
Feng-Jie Sun, Gustavo Caetano-Anollés
ICPADS
2005
IEEE
15 years 7 months ago
PRec-I-DCM3: A Parallel Framework for Fast and Accurate Large Scale Phylogeny Reconstruction
: Accurate reconstruction of phylogenetic trees very often involves solving hard optimization problems, particularly the maximum parsimony (MP) and maximum likelihood (ML) problems...
Cristian Coarfa, Yuri Dotsenko, John M. Mellor-Cru...
139
Voted
BIBM
2008
IEEE
106views Bioinformatics» more  BIBM 2008»
15 years 3 months ago
Uncovering Genomic Reassortments among Influenza Strains by Enumerating Maximal Bicliques
The evolutionary histories of viral genomes have received significant recent attention due to their importance in understanding virulence and the corresponding ramifications to pu...
Niranjan Nagarajan, Carl Kingsford
132
Voted
GECCO
2003
Springer
189views Optimization» more  GECCO 2003»
15 years 7 months ago
A Forest Representation for Evolutionary Algorithms Applied to Network Design
Abstract. Network design involves several areas of engineering and science. Computer networks, electrical circuits, transportation problems, and phylogenetic trees are some example...
Alexandre C. B. Delbem, André Carlos Ponce ...