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ITA
2007
118views Communications» more  ITA 2007»
14 years 9 months ago
Uniformly bounded duplication codes
Duplication is the replacement of a factor w within a word by ww. This operation can be used iteratively to generate languages starting from words or sets of words. By undoing dupl...
Peter Leupold, Victor Mitrana
DLT
2007
14 years 11 months ago
Duplication Roots
Recently the duplication closure of words and languages has received much interest. We investigate a reversal of it: the duplication root reduces a word to a square-free one. After...
Peter Leupold
RECOMB
2008
Springer
15 years 9 months ago
Locating Multiple Gene Duplications through Reconciled Trees
We introduce the first exact and efficient algorithm for Guig?o et al.'s problem that, given a collection of rooted, binary gene trees and a rooted, binary species tree, deter...
J. Gordon Burleigh, Mukul S. Bansal, André ...
JCB
2000
137views more  JCB 2000»
14 years 9 months ago
NOTUNG: A Program for Dating Gene Duplications and Optimizing Gene Family Trees
Large scale gene duplication is a major force driving the evolution of genetic functional innovation. Whole genome duplications are widely believed to have played an important rol...
Kevin Chen, Dannie Durand, Martin Farach-Colton
ISAAC
2009
Springer
147views Algorithms» more  ISAAC 2009»
15 years 4 months ago
Computing a Smallest Multi-labeled Phylogenetic Tree from Rooted Triplets
Abstract. We investigate the computational complexity of a new combinatorial problem of inferring a smallest possible multi-labeled phylogenetic tree (MUL tree) which is consistent...
Sylvain Guillemot, Jesper Jansson, Wing-Kin Sung