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BIOCOMP
2009
14 years 11 months ago
Consensus RNA Secondary Structure Prediction by Ranking k-Length Stems
The accurate computational prediction of RNA secondary structures is a difficult task, but an important one, since RNA structure is usually more evolutionarily conserved than prima...
Denise Y. F. Mak, Gary Benson
ICSE
2008
IEEE-ACM
15 years 10 months ago
Dynamic detection of atomic-set-serializability violations
Previously we presented atomic sets, memory locations that share some consistency property, and units of work, code fragments that preserve consistency of atomic sets on which the...
Christian Hammer, Julian Dolby, Mandana Vaziri, Fr...
ICPP
2006
IEEE
15 years 3 months ago
A Parallel, Out-of-Core Algorithm for RNA Secondary Structure Prediction
RNA pseudoknot prediction is an algorithm for RNA sequence search and alignment. An important building block towards pseudoknot prediction is RNA secondary structure prediction. T...
Wenduo Zhou, David K. Lowenthal
BMCBI
2007
124views more  BMCBI 2007»
14 years 10 months ago
Protein structural similarity search by Ramachandran codes
Background: Protein structural data has increased exponentially, such that fast and accurate tools are necessary to access structure similarity search. To improve the search speed...
Wei-Cheng Lo, Po-Jung Huang, Chih-Hung Chang, Ping...
CSMR
2007
IEEE
15 years 4 months ago
The Dynamic Function Coupling Metric and Its Use in Software Evolution
Many of the existing techniques for impact set computation in change propagation and regression testing are approximate for the sake of efficiency. A way to improve precision is ...
Árpád Beszédes, Tamás ...