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WABI
2010
Springer
128views Bioinformatics» more  WABI 2010»
14 years 8 months ago
Sparsification of RNA Structure Prediction Including Pseudoknots
Background: Although many RNA molecules contain pseudoknots, computational prediction of pseudoknotted RNA structure is still in its infancy due to high running time and space con...
Mathias Möhl, Raheleh Salari, Sebastian Will,...
ISSRE
2002
IEEE
15 years 2 months ago
An Empirical Study of Tracing Techniques from a Failure Analysis Perspective
Tracing is a dynamic analysis technique to continuously capture events of interest on a running program. The occurrence of a statement, the invocation of a function, and the trigg...
Satya Kanduri, Sebastian G. Elbaum
BMCBI
2007
129views more  BMCBI 2007»
14 years 10 months ago
Integrated network reconstruction, visualization and analysis using YANAsquare
Background: Modeling of metabolic networks includes tasks such as network assembly, network overview, calculation of metabolic fluxes and testing the robustness of the network. Re...
Roland Schwarz, Chunguang Liang, Christoph Kaleta,...
PPPJ
2009
ACM
15 years 4 months ago
Automatic parallelization for graphics processing units
Accelerated graphics cards, or Graphics Processing Units (GPUs), have become ubiquitous in recent years. On the right kinds of problems, GPUs greatly surpass CPUs in terms of raw ...
Alan Leung, Ondrej Lhoták, Ghulam Lashari
ATVA
2007
Springer
77views Hardware» more  ATVA 2007»
15 years 4 months ago
Proving Termination of Tree Manipulating Programs
Abstract. We consider the termination problem of programs manipulating treelike dynamic data structures. Our approach is based on a counter-example guided ion refinement loop. We ...
Peter Habermehl, Radu Iosif, Adam Rogalewicz, Tom&...