Background: This work explores the quantitative characteristics of the local transcriptional regulatory network based on the availability of time dependent gene expression data se...
Testing reachability between nodes in a graph is a well-known problem with many important applications, including knowledge representation, program analysis, and more recently, bi...
Background: Visualization of sequence annotation is a common feature in many bioinformatics tools. For many applications it is desirable to restrict the display of such annotation...
Bitwise operations are commonly used in low-level systems code to access multiple data fields that have been packed into a single word. Program analysis tools that reason about s...
An ad hoc data format is any non-standard, semi-structured data format for which robust data processing tools are not available. In this paper, we present ANNE, a new kind of mark...