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BMCBI
2005
126views more  BMCBI 2005»
15 years 2 months ago
GANN: Genetic algorithm neural networks for the detection of conserved combinations of features in DNA
Background: The multitude of motif detection algorithms developed to date have largely focused on the detection of patterns in primary sequence. Since sequence-dependent DNA struc...
Robert G. Beiko, Robert L. Charlebois
FOCS
1992
IEEE
15 years 6 months ago
Dynamic Half-Space Reporting, Geometric Optimization, and Minimum Spanning Trees
We describe dynamic data structures for half-space range reporting and for maintaining the minima of a decomposable function. Using these data structures, we obtain efficient dyna...
Pankaj K. Agarwal, David Eppstein, Jirí Mat...
PODC
2011
ACM
14 years 5 months ago
Coordinated consensus in dynamic networks
We study several variants of coordinated consensus in dynamic networks. We assume a synchronous model, where the communication graph for each round is chosen by a worst-case adver...
Fabian Kuhn, Rotem Oshman, Yoram Moses
IPPS
2006
IEEE
15 years 8 months ago
Bio-sequence database scanning on a GPU
Protein sequences with unknown functionality are often compared to a set of known sequences to detect functional similarities. Efficient dynamic programming algorithms exist for t...
Weiguo Liu, Bertil Schmidt, Gerrit Voss, Adrian Sc...
IJCNN
2007
IEEE
15 years 8 months ago
Probability Density Function Estimation Using Orthogonal Forward Regression
— Using the classical Parzen window estimate as the target function, the kernel density estimation is formulated as a regression problem and the orthogonal forward regression tec...
Sheng Chen, Xia Hong, Chris J. Harris