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» Dynamic Programming Algorithms for RNA Structure Prediction ...
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PSB
2010
14 years 10 months ago
Dynamic Programming Algorithms for RNA Structure Prediction with Binding Sites
Unyanee Poolsap, Yuki Kato, Tatsuya Akutsu
IJDMB
2010
216views more  IJDMB 2010»
14 years 10 months ago
Struct-NB: predicting protein-RNA binding sites using structural features
: We explore whether protein-RNA interfaces differ from non-interfaces in terms of their structural features and whether structural features vary according to the type of the bound...
Fadi Towfic, Cornelia Caragea, David C. Gemperline...
105
Voted
RECOMB
2006
Springer
16 years 15 days ago
A Study of Accessible Motifs and RNA Folding Complexity
mRNA molecules are folded in the cells and therefore many of their substrings may actually be inaccessible to protein and microRNA binding. The need to apply an accessability crite...
Ydo Wexler, Chaya Ben-Zaken Zilberstein, Michal Zi...
BMCBI
2007
94views more  BMCBI 2007»
15 years 5 days ago
A structural analysis of in vitro catalytic activities of hammerhead ribozymes
Background: Ribozymes are small catalytic RNAs that possess the dual functions of sequencespecific RNA recognition and site-specific cleavage. Trans-cleaving ribozymes can inhibit...
Yu Shao, Susan Wu, Chi Yu Chan, Jessie R. Klapper,...
108
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NAR
2007
129views more  NAR 2007»
14 years 11 months ago
taveRNA: a web suite for RNA algorithms and applications
We present taveRNA, a web server package that hosts three RNA web services: alteRNA, inteRNA and pRuNA. alteRNA is a new alternative for RNA secondary structure prediction. It is ...
Cagri Aksay, Raheleh Salari, Emre Karakoç, ...