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» Dynamic Programming and Graph Algorithms in Computer Vision
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ISMB
1996
15 years 3 months ago
Compact Encoding Strategies for DNA Sequence Similarity Search
Determining whether two DNA sequences are similar is an essential component of DNA sequence analysis. Dynamic programming is the algorithm of choice if computational time is not t...
David J. States, Pankaj Agarwal
ICALP
2005
Springer
15 years 7 months ago
New Approaches for Virtual Private Network Design
Virtual Private Network Design is the following NP-hard problem. We are given a communication network, represented as a weighted graph with thresholds on the nodes which represent...
Friedrich Eisenbrand, Fabrizio Grandoni, Gianpaolo...
WABI
2009
Springer
142views Bioinformatics» more  WABI 2009»
15 years 8 months ago
Back-Translation for Discovering Distant Protein Homologies
Background: Frameshift mutations in protein-coding DNA sequences produce a drastic change in the resulting protein sequence, which prevents classic protein alignment methods from ...
Marta Gîrdea, Laurent Noé, Gregory Ku...
EMSOFT
2004
Springer
15 years 7 months ago
Approximation of the worst-case execution time using structural analysis
We present a technique to approximate the worst-case execution time that combines structural analysis with a loop-bounding algorithm based on local induction variable analysis. St...
Matteo Corti, Thomas R. Gross
BIBE
2005
IEEE
126views Bioinformatics» more  BIBE 2005»
15 years 7 months ago
Highly Scalable and Accurate Seeds for Subsequence Alignment
We propose a method for finding seeds for the local alignment of two nucleotide sequences. Our method uses randomized algorithms to find approximate seeds. We present a dynamic ...
Abhijit Pol, Tamer Kahveci