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» Dynamic simulation of regulatory networks using SQUAD
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124
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BMCBI
2007
172views more  BMCBI 2007»
15 years 1 months ago
Bayesian approaches to reverse engineer cellular systems: a simulation study on nonlinear Gaussian networks
Background: Reverse engineering cellular networks is currently one of the most challenging problems in systems biology. Dynamic Bayesian networks (DBNs) seem to be particularly su...
Fulvia Ferrazzi, Paola Sebastiani, Marco Ramoni, R...
UMC
2000
15 years 5 months ago
In-vitro Transcriptional Circuits
The structural similarity of neural networks and genetic regulatory networks to digital circuits, and hence to each other, was noted from the very beginning of their study [1, 2]....
Erik Winfree
ISCA
2007
IEEE
196views Hardware» more  ISCA 2007»
15 years 8 months ago
Anton, a special-purpose machine for molecular dynamics simulation
The ability to perform long, accurate molecular dynamics (MD) simulations involving proteins and other biological macromolecules could in principle provide answers to some of the ...
David E. Shaw, Martin M. Deneroff, Ron O. Dror, Je...
114
Voted
IAT
2005
IEEE
15 years 7 months ago
Dynamic Lightpath Protection in WDM optical Networks Using Ant-based Mobile Agents
In this paper, we consider the problem of dynamic lightpath protection in survivable WDM networks with single link failure model. Our work concerns in how to dynamically determine...
Son-Hong Ngo, Xiaohong Jiang, Susumu Horiguchi
118
Voted
BMCBI
2006
117views more  BMCBI 2006»
15 years 1 months ago
A method for estimation of elasticities in metabolic networks using steady state and dynamic metabolomics data and linlog kineti
Background: Dynamic modeling of metabolic reaction networks under in vivo conditions is a crucial step in order to obtain a better understanding of the (dis)functioning of living ...
I. Emrah Nikerel, Wouter A. van Winden, Walter M. ...