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» Dynamic simulation of regulatory networks using SQUAD
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BMCBI
2008
154views more  BMCBI 2008»
14 years 11 months ago
GeNESiS: gene network evolution simulation software
Background: There has been a lot of interest in recent years focusing on the modeling and simulation of Gene Regulatory Networks (GRNs). However, the evolutionary mechanisms that ...
Anton Kratz, Masaru Tomita, Arun Krishnan
CEC
2008
IEEE
14 years 12 months ago
Regulation of gene regulation - smooth binding with dynamic affinity affects evolvability
Abstract-- Understanding the evolvability of simple differentiating multicellular systems is a fundamental problem in the biology of genetic regulatory networks and in computationa...
Johannes F. Knabe, Chrystopher L. Nehaniv, Maria J...
ICONIP
2004
15 years 1 months ago
Modeling Gene Regulatory Network in Fission Yeast Cell Cycle Using Hybrid Petri Nets
The complexity of gene regulatory network models stems from the fact that the models should be able to represent continuous, discrete as well as stochastic aspects of gene regulati...
Ranjith Vasireddy, Somenath Biswas
BMCBI
2010
176views more  BMCBI 2010»
14 years 11 months ago
Reverse engineering gene regulatory network from microarray data using linear time-variant model
nd: Gene regulatory network is an abstract mapping of gene regulations in living cells that can help to predict the system behavior of living organisms. Such prediction capability...
Mitra Kabir, Nasimul Noman, Hitoshi Iba
GECCO
2005
Springer
180views Optimization» more  GECCO 2005»
15 years 5 months ago
Inference of gene regulatory networks using s-system and differential evolution
In this work we present an improved evolutionary method for inferring S-system model of genetic networks from the time series data of gene expression. We employed Differential Ev...
Nasimul Noman, Hitoshi Iba