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» EDGE: extraction and analysis of differential gene expressio...
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BMCBI
2005
124views more  BMCBI 2005»
14 years 9 months ago
Tools enabling the elucidation of molecular pathways active in human disease: Application to Hepatitis C virus infection
Background: The extraction of biological knowledge from genome-scale data sets requires its analysis in the context of additional biological information. The importance of integra...
David J. Reiss, Iliana Avila-Campillo, Vesteinn Th...
KDID
2004
140views Database» more  KDID 2004»
14 years 11 months ago
Mining Formal Concepts with a Bounded Number of Exceptions from Transactional Data
We are designing new data mining techniques on boolean contexts to identify a priori interesting bi-sets (i.e., sets of objects or transactions associated to sets of attributes or ...
Jérémy Besson, Céline Robarde...
BMCBI
2008
242views more  BMCBI 2008»
14 years 9 months ago
annot8r: GO, EC and KEGG annotation of EST datasets
Background: The expressed sequence tag (EST) methodology is an attractive option for the generation of sequence data for species for which no completely sequenced genome is availa...
Ralf Schmid, Mark L. Blaxter
BMCBI
2008
136views more  BMCBI 2008»
14 years 9 months ago
GPAT: Retrieval of genomic annotation from large genomic position datasets
Background: Recent genome wide transcription factor binding site or chromatin modification mapping analysis techniques, such as chromatin immunoprecipitation (ChIP) linked to DNA ...
Arnaud Krebs, Mattia Frontini, Làszlò...
BMCBI
2005
157views more  BMCBI 2005»
14 years 9 months ago
Statistical Viewer: a tool to upload and integrate linkage and association data as plots displayed within the Ensembl genome bro
Background: To facilitate efficient selection and the prioritization of candidate complex disease susceptibility genes for association analysis, increasingly comprehensive annotat...
Judith E. Stenger, Hong Xu, Carol Haynes, Elizabet...