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» EDGE: extraction and analysis of differential gene expressio...
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BMCBI
2010
129views more  BMCBI 2010»
14 years 9 months ago
Geoseq: a tool for dissecting deep-sequencing datasets
Background: Datasets generated on deep-sequencing platforms have been deposited in various public repositories such as the Gene Expression Omnibus (GEO), Sequence Read Archive (SR...
James Gurtowski, Anthony Cancio, Hardik Shah, Chay...
ICDE
2010
IEEE
260views Database» more  ICDE 2010»
15 years 9 months ago
Anonymizing Weighted Social Network Graphs
The increasing popularity of social networks has initiated a fertile research area in information extraction and data mining. Although such analysis can facilitate better understan...
Sudipto Das, Ömer Egecioglu, Amr El Abbadi
BMCBI
2010
138views more  BMCBI 2010»
14 years 9 months ago
UFFizi: a generic platform for ranking informative features
Background: Feature selection is an important pre-processing task in the analysis of complex data. Selecting an appropriate subset of features can improve classification or cluste...
Assaf Gottlieb, Roy Varshavsky, Michal Linial, Dav...
BMCBI
2010
145views more  BMCBI 2010»
14 years 9 months ago
WaveletQuant, an improved quantification software based on wavelet signal threshold de-noising for labeled quantitative proteomi
Background: Quantitative proteomics technologies have been developed to comprehensively identify and quantify proteins in two or more complex samples. Quantitative proteomics base...
Fan Mo, Qun Mo, Yuanyuan Chen, David R. Goodlett, ...
BMCBI
2005
169views more  BMCBI 2005»
14 years 9 months ago
MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes
Background: Cis-regulatory modules are combinations of regulatory elements occurring in close proximity to each other that control the spatial and temporal expression of genes. Th...
Voichita D. Marinescu, Isaac S. Kohane, Alberto Ri...