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WSC
2007
15 years 2 months ago
Transformations for accelerating MCMC simulations with broken ergodicity
A new approach for overcoming broken ergodicity in Markov Chain Monte Carlo (MCMC) simulations of complex systems is described. The problem of broken ergodicity is often present i...
Mark Fleischer
CMSB
2008
Springer
15 years 1 months ago
A Language for Biochemical Systems
Abstract. CBS is a Calculus of Biochemical Systems intended to allow the modelling of metabolic, signalling and regulatory networks in a natural and modular manner. In this paper w...
Michael Pedersen, Gordon D. Plotkin
MASCOTS
2010
15 years 1 months ago
Modeling the Run-time Behavior of Transactional Memory
In this paper, we develop a queuing theory based analytical model to evaluate the performance of transactional memory. Based on the statistical characteristics observed on actual e...
Zhengyu He, Bo Hong
NIPS
2008
15 years 1 months ago
Efficient Sampling for Gaussian Process Inference using Control Variables
Sampling functions in Gaussian process (GP) models is challenging because of the highly correlated posterior distribution. We describe an efficient Markov chain Monte Carlo algori...
Michalis Titsias, Neil D. Lawrence, Magnus Rattray
NIPS
2008
15 years 1 months ago
Evaluating probabilities under high-dimensional latent variable models
We present a simple new Monte Carlo algorithm for evaluating probabilities of observations in complex latent variable models, such as Deep Belief Networks. While the method is bas...
Iain Murray, Ruslan Salakhutdinov