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» Efficiency of Nested Relational Document Database Systems
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BMCBI
2002
120views more  BMCBI 2002»
15 years 1 months ago
tacg - a grep for DNA
Background: Pattern matching is the core of bioinformatics; it is used in database searching, restriction enzyme mapping, and finding open reading frames. It is done repeatedly ov...
Harry Mangalam
124
Voted
BMCBI
2010
162views more  BMCBI 2010»
15 years 1 months ago
Moara: a Java library for extracting and normalizing gene and protein mentions
Background: Gene/protein recognition and normalization are important preliminary steps for many biological text mining tasks, such as information retrieval, protein-protein intera...
Mariana L. Neves, José María Carazo,...
KDD
2003
ACM
99views Data Mining» more  KDD 2003»
16 years 1 months ago
Fragments of order
High-dimensional collections of 0-1 data occur in many applications. The attributes in such data sets are typically considered to be unordered. However, in many cases there is a n...
Aristides Gionis, Teija Kujala, Heikki Mannila
BMCBI
2010
103views more  BMCBI 2010»
15 years 1 months ago
A method of predicting changes in human gene splicing induced by genetic variants in context of cis-acting elements
Background: Polymorphic variants and mutations disrupting canonical splicing isoforms are among the leading causes of human hereditary disorders. While there is a substantial evid...
Alexander G. Churbanov, Igor Vorechovsky, Chindo H...
114
Voted
SIGMOD
1997
ACM
172views Database» more  SIGMOD 1997»
15 years 5 months ago
An Array-Based Algorithm for Simultaneous Multidimensional Aggregates
Computing multiple related group-bys and aggregates is one of the core operations of On-Line Analytical Processing (OLAP) applications. Recently, Gray et al. [GBLP95] proposed the...
Yihong Zhao, Prasad Deshpande, Jeffrey F. Naughton