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BMCBI
2002
120views more  BMCBI 2002»
14 years 11 months ago
tacg - a grep for DNA
Background: Pattern matching is the core of bioinformatics; it is used in database searching, restriction enzyme mapping, and finding open reading frames. It is done repeatedly ov...
Harry Mangalam
BMCBI
2010
162views more  BMCBI 2010»
14 years 11 months ago
Moara: a Java library for extracting and normalizing gene and protein mentions
Background: Gene/protein recognition and normalization are important preliminary steps for many biological text mining tasks, such as information retrieval, protein-protein intera...
Mariana L. Neves, José María Carazo,...
KDD
2003
ACM
99views Data Mining» more  KDD 2003»
16 years 1 days ago
Fragments of order
High-dimensional collections of 0-1 data occur in many applications. The attributes in such data sets are typically considered to be unordered. However, in many cases there is a n...
Aristides Gionis, Teija Kujala, Heikki Mannila
BMCBI
2010
103views more  BMCBI 2010»
14 years 11 months ago
A method of predicting changes in human gene splicing induced by genetic variants in context of cis-acting elements
Background: Polymorphic variants and mutations disrupting canonical splicing isoforms are among the leading causes of human hereditary disorders. While there is a substantial evid...
Alexander G. Churbanov, Igor Vorechovsky, Chindo H...
SIGMOD
1997
ACM
172views Database» more  SIGMOD 1997»
15 years 3 months ago
An Array-Based Algorithm for Simultaneous Multidimensional Aggregates
Computing multiple related group-bys and aggregates is one of the core operations of On-Line Analytical Processing (OLAP) applications. Recently, Gray et al. [GBLP95] proposed the...
Yihong Zhao, Prasad Deshpande, Jeffrey F. Naughton