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BMCBI
2007
105views more  BMCBI 2007»
14 years 9 months ago
Generating confidence intervals on biological networks
Background: In the analysis of networks we frequently require the statistical significance of some network statistic, such as measures of similarity for the properties of interact...
Thomas Thorne, Michael P. H. Stumpf
ICML
2007
IEEE
15 years 10 months ago
Graph clustering with network structure indices
Graph clustering has become ubiquitous in the study of relational data sets. We examine two simple algorithms: a new graphical adaptation of the k-medoids algorithm and the Girvan...
Matthew J. Rattigan, Marc Maier, David Jensen
ICML
2008
IEEE
15 years 10 months ago
Laplace maximum margin Markov networks
We propose Laplace max-margin Markov networks (LapM3 N), and a general class of Bayesian M3 N (BM3 N) of which the LapM3 N is a special case with sparse structural bias, for robus...
Jun Zhu, Eric P. Xing, Bo Zhang
RECOMB
2005
Springer
15 years 10 months ago
Constructing a Smallest Refining Galled Phylogenetic Network
Reticulation events occur frequently in many types of species. Therefore, to develop accurate methods for reconstructing phylogenetic networks in order to describe evolutionary his...
Trinh N. D. Huynh, Jesper Jansson, Nguyen Bao Nguy...
BIOINFORMATICS
2006
106views more  BIOINFORMATICS 2006»
14 years 9 months ago
Identification of biochemical networks by S-tree based genetic programming
Motivation: Most previous approaches to model biochemical networks havefocusedeither on the characterization of a networkstructurewith a number of components or on the estimation ...
Dong-Yeon Cho, Kwang-Hyun Cho, Byoung-Tak Zhang