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» Efficient Mining of Recurrent Rules from a Sequence Database
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BMCBI
2006
136views more  BMCBI 2006»
14 years 9 months ago
Java GUI for InterProScan (JIPS): A tool to help process multiple InterProScans and perform ortholog analysis
Background: Recent, rapid growth in the quantity of available genomic data has generated many protein sequences that are not yet biochemically classified. Thus, the prediction of ...
Aijazuddin Syed, Chris Upton
BMCBI
2008
141views more  BMCBI 2008»
14 years 9 months ago
The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation
Background: Automated protein function prediction methods are needed to keep pace with high-throughput sequencing. With the existence of many programs and databases for inferring ...
Chenggang Yu, Nela Zavaljevski, Valmik Desai, Seth...
192
Voted
ICDE
2009
IEEE
176views Database» more  ICDE 2009»
15 years 11 months ago
Discovering Conditional Functional Dependencies
This paper investigates the discovery of conditional functional dependencies (CFDs). CFDs are a recent extension of functional dependencies (FDs) by supporting patterns of semantic...
Wenfei Fan, Floris Geerts, Laks V. S. Lakshmanan, ...
SAC
2008
ACM
14 years 9 months ago
Adding background knowledge to formal concept analysis via attribute dependency formulas
We present a way to add user's background knowledge to formal concept analysis. The type of background knowledge we deal with relates to relative importance of attributes in ...
Radim Belohlávek, Vilém Vychodil
82
Voted
VLDB
1997
ACM
97views Database» more  VLDB 1997»
15 years 1 months ago
The Complexity of Transformation-Based Join Enumeration
Query optimizers that explore a search space exhaustively using transformation rules usually apply all possible rules on each alternative, and stop when no new information is prod...
Arjan Pellenkoft, César A. Galindo-Legaria,...