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» Efficient Parallel Computation of PageRank
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2004
IEEE
15 years 1 months ago
RFS: efficient and flexible remote file access for MPI-IO
Scientific applications often need to access remote file systems. Because of slow networks and large data size, however, remote I/O can become an even more serious performance bot...
Jonghyun Lee, Robert B. Ross, Rajeev Thakur, Xiaos...
HPCN
1998
Springer
15 years 2 months ago
PARAFLOW: A Dataflow Distributed Data-Computing System
We describe the Paraflow system for connecting heterogeneous computing services together into a flexible and efficient data-mining metacomputer. There are three levels of parallel...
Roy Williams, Bruce Sears
IPPS
1998
IEEE
15 years 2 months ago
VPPB - A Visualization and Performance Prediction Tool for Multithreaded Solaris Programs
Efficient performance tuning of parallel programs is often hard. In this paper we describe an approach that uses a uni-processor execution of a multithreaded program as reference ...
Magnus Broberg, Lars Lundberg, Håkan Grahn
IPPS
2010
IEEE
14 years 7 months ago
Exploring parallelism in short sequence mapping using Burrows-Wheeler Transform
Next-generation high throughput sequencing instruments are capable of generating hundreds of millions of reads in a single run. Mapping those reads to a reference genome is an ext...
Doruk Bozdag, Ayat Hatem, Ümit V. Çata...
IPPS
2010
IEEE
14 years 7 months ago
pFANGS: Parallel high speed sequence mapping for Next Generation 454-roche Sequencing reads
Millions of DNA sequences (reads) are generated by Next Generation Sequencing machines everyday. There is a need for high performance algorithms to map these sequences to the refer...
Sanchit Misra, Ramanathan Narayanan, Wei-keng Liao...