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IPPS
1996
IEEE
15 years 2 months ago
A Class of Interconnection Networks for Multicasting
Multicast, or one-to-many, communication arises frequently in parallel computing and telecommunication applications. Multicast networks can simultaneously support multiple multicas...
Yuanyuan Yang
ICPADS
2010
IEEE
14 years 8 months ago
Effective Performance Measurement at Petascale Using IPM
As supercomputers are being built from an ever increasing number of processing elements, the effort required to achieve a substantial fraction of the system peak performance is con...
Karl Fürlinger, Nicholas J. Wright, David Ski...
IPPS
2010
IEEE
14 years 8 months ago
Large-scale multi-dimensional document clustering on GPU clusters
Document clustering plays an important role in data mining systems. Recently, a flocking-based document clustering algorithm has been proposed to solve the problem through simulat...
Yongpeng Zhang, Frank Mueller, Xiaohui Cui, Thomas...
IPPS
2009
IEEE
15 years 4 months ago
Accelerating HMMer on FPGAs using systolic array based architecture
HMMer is a widely-used bioinformatics software package that uses profile HMMs (Hidden Markov Models) to model the primary structure consensus of a family of protein or nucleic aci...
Yanteng Sun, Peng Li, Guochang Gu, Yuan Wen, Yuan ...
SP
2008
IEEE
122views Security Privacy» more  SP 2008»
14 years 10 months ago
Large-scale phylogenetic analysis on current HPC architectures
Abstract. Phylogenetic inference is considered a grand challenge in Bioinformatics due to its immense computational requirements. The increasing popularity and availability of larg...
Michael Ott, Jaroslaw Zola, Srinivas Aluru, Andrew...