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BIBM
2008
IEEE
110views Bioinformatics» more  BIBM 2008»
15 years 4 months ago
Genome Alignments Using MPI-LAGAN
We develop a parallel algorithm for a widely used whole genome alignment method called LAGAN. We use the MPI-based protocol to develop parallel solutions for two phases of the alg...
Ruinan Zhang, Huzefa Rangwala, George Karypis
SAC
2009
ACM
15 years 4 months ago
DARAW: a new write buffer to improve parallel I/O energy-efficiency
In the past decades, parallel I/O systems have been used widely to support scientific and commercial applications. New data centers today employ huge quantities of I/O systems, wh...
Xiaojun Ruan, Adam Manzanares, Kiranmai Bellam, Xi...
CLUSTER
2008
IEEE
14 years 11 months ago
Efficient one-copy MPI shared memory communication in Virtual Machines
Efficient intra-node shared memory communication is important for High Performance Computing (HPC), especially with the emergence of multi-core architectures. As clusters continue ...
Wei Huang, Matthew J. Koop, Dhabaleswar K. Panda
IPPS
2006
IEEE
15 years 3 months ago
FPGA based architecture for DNA sequence comparison and database search
DNA sequence comparison is a computationally intensive problem, known widely since the competition for human DNA decryption. Database search for DNA sequence comparison is of grea...
Euripides Sotiriades, Christos Kozanitis, Apostolo...
CHI
2001
ACM
15 years 10 months ago
The dynamics of mass online marketplaces: a case study of an online auction
The Internet has dramatically changed how people sell and buy goods. In recent years we have seen the emergence of electronic marketplaces that leverage information technology to ...
Jungpil Hahn